species:   Clros
pid:       PID2227
parent:    cro-mir-21
paralog:   
locus:     CADEHS020000004.2:1849985-1850028
matures:   ['UCUUCGGCGUCUUGGCUGU', 'GGUCGCAAGAUUUUCGAGGCCA']
srr:       ERR5960091
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram CADEHS020000004.2:1849985-1850028

11 out of bounds
16 alignments
16 proper strand
14 stranded perfect matches

********************     *****************  
GGUCGCAAGAUUUUCGAGGCCAACUUCUUCGGCGUCUUGGCUGU
(((..((((((..((((((.......)))))).)))))))))..
-------------------------UCUUCGGCGUCUUGGCUGU l=19 a=2 c
GGUCGCAAGAUUUUCGAGGCCA---------------------- l=22 a=0 c*
---------------------------UUCGGCGUCUUGGCU-- l=15 a=6 ma
--UCGCAAGAUUUUCGAGGC------------------------ l=18 a=0 ma*

----------------------------UCGGCGUCUUGGCU-- l=14 a=3 
----------------------------UCGGCGUCUUGGCUG- l=15 a=1 
---------------------------UUCGGCGUCUUGGCU-- l=15 a=6 (ma)
---------------------------UUCGGCGUCUUGGCUa- l=16 a=1 
-------------------------UCUUCGGCGUCUUGGC--- l=16 a=2 
-------------------------UCUUCGGCGUCUUGGCUGU l=19 a=2 (c)
-------------------------UCUUCGGCGUCUUGGCUGa l=19 a=1 

mb-01011
ax-1011001
ku-01
ss-101011111110
fn-111
